ECODEvolutionary Classification of Protein Domains

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ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

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e8tg3A1 - ECOD Domain | ECOD

ECOD/Domains/e8tg3A1

e8tg3A1

UID: 003106803

PDB

Range: A:0-83
PDB: 8TG3 chain A(all domains)

Molecule: Probable RNA 2'-phosphotransferase

3D Structure

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Related Domains

Browse other domains in PTS_2-RNA →

Classification

AArchitecturealpha arrays(a.6)

XX-groupHTH(101)

HH-groupHTH(101.1)

TT-groupwinged helix domain(101.1.2)

FFamilyPTS_2-RNA(101.1.2.29)

Ligands

in contact, ≤ 4 Å

[[(2~{R},3~{S},4~{R},5~{R})-5-(6-aminopurin-9-yl)-3,4-bis(oxidanyl)oxolan-2-yl]methoxy-oxidanyl-phosphoryl] [(2~{R},3~{S},4~{R},5~{R})-3,4-bis(oxidanyl)-5-phosphonooxy-oxolan-2-yl]methyl hydrogen phosphateHQG

+ 3 additives (Glycerin, Nitrate, DI(HYDROXYETHYL)ETHER)

GlycerinGOL
DrugBank DB09462

Pfam Families

PF01885PTS_2-RNA

RNA 2'-phosphotransferase, Tpt1 / KptA family

ClanCL0084ADP-ribosyl

External Links

ECOD PDB View: 8TG3 RCSB PDB: 8TG3 PDBe: 8TG3

Downloads

Download Domain PDB Download Domain FASTA Full PDB Structure

NitrateNO3

DrugBank DB14049

DI(HYDROXYETHYL)ETHERPEG

Shown in the structure viewer. Drug annotations from DrugDomain.