ECODEvolutionary Classification of Protein Domains

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About ECOD

ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

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e2uzhB1 - ECOD Domain | ECOD

ECOD/Domains/e2uzhB1

e2uzhB1

UID: 000330979

PDB

Range: B:3-157
PDB: 2UZH chain B(all domains)
UniProt: A0R559 (all domains)
Gene: ispF

Molecule: 2C-METHYL-D-ERYTHRITOL 2,4-CYCLODIPHOSPHATE SYNTHASE

3D Structure

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Related Domains

Browse other domains in YgbB →

Classification

AArchitecturea+b three layers(a.12)

XX-groupBacillus chorismate mutase-like(301)

HH-group2C-methyl-D-erythritol 2,4-cyclodiphosphate synthase IspF(301.5)

TT-group2C-methyl-D-erythritol 2,4-cyclodiphosphate synthase IspF(301.5.1)

FFamilyYgbB(301.5.1.1)

Ligands

in contact, ≤ 4 Å

Cytidine-5'-DiphosphateCDP
drugDrugBank DB04555
ISOPENTENYL PYROPHOSPHATEIPE
drugDrugBank DB04714

Pfam Families

YgbB family

External Links

ECOD PDB View: 2UZH RCSB PDB: 2UZH PDBe: 2UZH UniProt: A0R559

Downloads

Download Domain PDB Download Domain FASTA Full PDB Structure

Zinc ion

metal

+ 3 additives (Glycerin, 1,2-ETHANEDIOL, DI(HYDROXYETHYL)ETHER)

GlycerinGOL
DrugBank DB09462
1,2-ETHANEDIOLEDO
DI(HYDROXYETHYL)ETHERPEG

Shown in the structure viewer. Drug annotations from DrugDomain.