ECODEvolutionary Classification of Protein Domains

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ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

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e2vg1B1 - ECOD Domain | ECOD

ECOD/Domains/e2vg1B1

e2vg1B1

UID: 000331387

PDB

Range: B:29-256
PDB: 2VG1 chain B(all domains)
UniProt: P9WFF5 (all domains)
Gene: Rv1086

Molecule: SHORT-CHAIN Z-ISOPRENYL DIPHOSPHATE SYNTHETASE

3D Structure

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Related Domains

Browse other domains in Prenyltransf →

Classification

AArchitecturea/b three-layered sandwiches(a.17)

XX-groupUndecaprenyl diphosphate synthase(7534)

HH-groupUndecaprenyl diphosphate synthase(7534.1)

TT-groupUndecaprenyl diphosphate synthase(7534.1.1)

FFamilyPrenyltransf(7534.1.1.1)

Ligands

in contact, ≤ 4 Å

Farnesyl diphosphateFPP
drugDrugBank DB07780

+ 2 additives (Glycerin, Phosphate ion)

GlycerinGOL
DrugBank DB09462

Pfam Families

PF01255Prenyltransf

Putative undecaprenyl diphosphate synthase

External Links

ECOD PDB View: 2VG1 RCSB PDB: 2VG1 PDBe: 2VG1 UniProt: P9WFF5

Downloads

Download Domain PDB Download Domain FASTA Full PDB Structure

Phosphate ion

DrugBank DB14523

Shown in the structure viewer. Drug annotations from DrugDomain.