ECODEvolutionary Classification of Protein Domains

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About ECOD

ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

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e2jjrA1 - ECOD Domain | ECOD

ECOD/Domains/e2jjrA1

e2jjrA1

UID: 000354954

PDB

Range: A:1-247
PDB: 2JJR chain A(all domains)
UniProt: P09989 (all domains)

Molecule: RIBOSOME-INACTIVATING PROTEIN ALPHA-TRICHOSANTHIN

3D Structure

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Related Domains

Browse other domains in RIP →

Classification

AArchitecturea+b two layers(a.11)

XX-groupRIP/Polo-box domain(292)

HH-groupRibosome inactivating proteins (RIP)(292.1)

TT-groupRibosome inactivating proteins (RIP)(292.1.1)

FFamilyRIP(292.1.1.1)

Ligands

in contact, ≤ 4 Å

Tris(Hydroxyethyl)AminomethaneTAM
drugDrugBank DB04237

+ 2 additives (Sulfate ion, DI(HYDROXYETHYL)ETHER)

Sulfate ionSO4
DrugBank DB14546

Pfam Families

Ribosome inactivating protein

External Links

ECOD PDB View: 2JJR RCSB PDB: 2JJR PDBe: 2JJR UniProt: P09989

Downloads

Download Domain PDB Download Domain FASTA Full PDB Structure

DI(HYDROXYETHYL)ETHERPEG

Shown in the structure viewer. Drug annotations from DrugDomain.