ECODEvolutionary Classification of Protein Domains

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About ECOD

ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

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P23921_F1_nD3 - ECOD Domain | ECOD

ECOD/Domains/P23921_F1_nD3

P23921_F1_nD3

UID: 003551941

AlphaFold

Range: 216-760
AlphaFold: AF-P23921
UniProt: P23921 (all domains)
Gene: RRM1

Protein: Ribonucleoside-diphosphate reductase large subunit (EC 1.17.4.1) (Ribonucleoside-diphosphate reductase subunit M1) (Ribonucleotide reductase large subunit)

3D Structure

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Related Domains

Browse other domains in Ribonuc_red_lgC →

Classification

AArchitecturea/b barrels(a.16)

XX-groupTen stranded beta/alpha barrel(2500)

HH-groupTen stranded beta/alpha barrel(2500.1)

TT-groupTen stranded beta/alpha barrel(2500.1.1)

FFamilyRibonuc_red_lgC(2500.1.1.2)

Ligands

in contact, ≤ 4 Å

Cladribine
drugDrugBank DB00242within 5 Å only
Gemcitabine
drugDrugBank DB00441within 5 Å only
Clofarabine

Pfam Families

PF02867Ribonuc_red_lgC

Ribonucleotide reductase, barrel domain

ClanCL0339PFL-like

External Links

AlphaFold DB: P23921 UniProt: P23921

Representative

This domain is classified based on similarity to:

Downloads

Download Domain PDB Download Domain FASTA Full AlphaFold Structure (PDB)Full AlphaFold Structure (mmCIF)

Domain coordinates: residues 216-760

drugDrugBank DB00631within 5 Å only

Hydroxyurea

drugDrugBank DB01005within 5 Å only

DB01073

drugDrugBank DB01073within 5 Å only

DB05003

drugDrugBank DB05003within 5 Å only

DB05420

drugDrugBank DB05420within 5 Å only

DB06433

drugDrugBank DB06433within 5 Å only

Shown in the structure viewer. Drug annotations from DrugDomain.