ECODEvolutionary Classification of Protein Domains

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ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

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e3fdsD1 - ECOD Domain | ECOD

ECOD/Domains/e3fdsD1

e3fdsD1

UID: 000356298

PDB

Range: D:1-115
PDB: 3FDS chain D(all domains)
UniProt: Q97Z84 (all domains)
Gene: pcn2

Molecule: DNA polymerase sliding clamp C

3D Structure

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Related Domains

Browse other domains in PCNA_N →

Classification

AArchitecturea+b two layers(a.11)

XX-groupDNA clamp(227)

HH-groupDNA clamp(227.1)

TT-groupDNA clamp(227.1.1)

FFamilyPCNA_N(227.1.1.1)

Ligands

in contact, ≤ 4 Å

Only buffers and crystallization additives.

+ 3 additives (Triethylene glycol, 1,2-ETHANEDIOL, DI(HYDROXYETHYL)ETHER)

Triethylene glycolPGE
DrugBank DB02327
1,2-ETHANEDIOLEDO
DI(HYDROXYETHYL)ETHERPEG

Pfam Families

Proliferating cell nuclear antigen, N-terminal domain

ClanCL0060DNA_clamp

External Links

ECOD PDB View: 3FDS RCSB PDB: 3FDS PDBe: 3FDS UniProt: Q97Z84

Downloads

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Shown in the structure viewer. Drug annotations from DrugDomain.