ECODEvolutionary Classification of Protein Domains

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ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

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e3gp9D1 - ECOD Domain | ECOD

ECOD/Domains/e3gp9D1

e3gp9D1

UID: 000369455

PDB

Range: D:2-130
PDB: 3GP9 chain D(all domains)
UniProt: Q5UQL3 (all domains)
Gene: NDK

Molecule: Nucleoside diphosphate kinase

3D Structure

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Related Domains

Browse other domains in NDK →

Classification

AArchitecturea+b two layers(a.11)

XX-groupAlpha-beta plaits(304)

HH-groupNucleoside diphosphate kinases(304.34)

TT-groupNucleoside diphosphate kinases(304.34.1)

FFamilyNDK(304.34.1.1)

Ligands

in contact, ≤ 4 Å

Guanosine-5'-DiphosphateGDP
drugDrugBank DB04315
Magnesium ionMG
metal

+ 1 additive (Phosphate ion)

Pfam Families

Nucleoside diphosphate kinase

External Links

ECOD PDB View: 3GP9 RCSB PDB: 3GP9 PDBe: 3GP9 UniProt: Q5UQL3

Downloads

Download Domain PDB Download Domain FASTA Full PDB Structure

Phosphate ionPO4

DrugBank DB14523

Shown in the structure viewer. Drug annotations from DrugDomain.