ECODEvolutionary Classification of Protein Domains

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ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

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e3kb6D2 - ECOD Domain | ECOD

ECOD/Domains/e3kb6D2

e3kb6D2

UID: 000377054

PDB

Range: D:1-97,D:298-334
PDB: 3KB6 chain D(all domains)
UniProt: O66939 (all domains)
Gene: ldhA

Molecule: D-lactate dehydrogenase

3D Structure

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Related Domains

Browse other domains in 2-Hacid_dh →

Classification

AArchitecturea/b three-layered sandwiches(a.17)

XX-groupRossmann-like(2003)

HH-groupRossmann-related(2003.1)

TT-groupFormate/glycerate dehydrogenase catalytic domain-like(2003.1.11)

FFamily2-Hacid_dh(2003.1.11.1)

Ligands

in contact, ≤ 4 Å

D-Lactic acidLAC
drugDrugBank DB03066
NadideNAD
drugDrugBank DB14128
Propanoic acid

Pfam Families

PF003892-Hacid_dh

D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain

ClanCL0063NADP_Rossmann

External Links

ECOD PDB View: 3KB6 RCSB PDB: 3KB6 PDBe: 3KB6 UniProt: O66939

Downloads

Download Domain PDB Download Domain FASTA Full PDB Structure

drugDrugBank DB03766

+ 2 additives (Glycerin, DI(HYDROXYETHYL)ETHER)

GlycerinGOL
DrugBank DB09462
DI(HYDROXYETHYL)ETHERPEG

Shown in the structure viewer. Drug annotations from DrugDomain.