ECODEvolutionary Classification of Protein Domains

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ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

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e3ks6D1 - ECOD Domain | ECOD

ECOD/Domains/e3ks6D1

e3ks6D1

UID: 000378993

PDB

Range: D:1-246
PDB: 3KS6 chain D(all domains)
UniProt: A9CLR1 (all domains)
Gene: glpQ

Molecule: Glycerophosphoryl diester phosphodiesterase

3D Structure

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Related Domains

Browse other domains in GDPD →

Classification

AArchitecturea/b barrels(a.16)

XX-groupTIM beta/alpha-barrel(2002)

HH-groupTIM barrels(2002.1)

TT-groupTIM barrels(2002.1.1)

FFamilyGDPD(2002.1.1.106)

Ligands

in contact, ≤ 4 Å

Magnesium ionMG
metal
Unknown ligandUNL

+ 2 additives (Acetate, DI(HYDROXYETHYL)ETHER)

AcetateACT

Pfam Families

Glycerophosphoryl diester phosphodiesterase family

ClanCL0036TIM_barrel

External Links

ECOD PDB View: 3KS6 RCSB PDB: 3KS6 PDBe: 3KS6 UniProt: A9CLR1

Downloads

Download Domain PDB Download Domain FASTA Full PDB Structure

DrugBank DB14511

DI(HYDROXYETHYL)ETHERPEG

Shown in the structure viewer. Drug annotations from DrugDomain.