ECODEvolutionary Classification of Protein Domains

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ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

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e3ksqA1 - ECOD Domain | ECOD

ECOD/Domains/e3ksqA1

e3ksqA1

UID: 000382261

PDB

Range: A:54-368
PDB: 3KSQ chain A(all domains)
UniProt: Q04631 (all domains)
Gene: Fnta

Molecule: Farnesyltransferase, CAAX box, alpha

3D Structure

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Related Domains

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Classification

AArchitecturealpha superhelices(a.9)

XX-groupRepetitive alpha hairpins(109)

HH-groupARM repeat(109.4)

TT-groupARM repeat(109.4.1)

FFamilyPPTA(109.4.1.18)

Ligands

in contact, ≤ 4 Å

Farnesyl diphosphateFPP
drugDrugBank DB07780
Magnesium ionMG
metal
tert-butyl 4-{(11S)-8-chloro-6-[(R)-hydroxy(1-methyl-1H-imidazol-5-yl)methyl]-11H-benzo[5,6]cyclohepta[1,2-b]pyridin-11-yl}piperazine-1-carboxylate

Pfam Families

Protein prenyltransferase alpha subunit repeat

ClanCL0020TPR

External Links

ECOD PDB View: 3KSQ RCSB PDB: 3KSQ PDBe: 3KSQ UniProt: Q04631

Downloads

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Shown in the structure viewer. Drug annotations from DrugDomain.