ECODEvolutionary Classification of Protein Domains

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ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

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e3lptA1 - ECOD Domain | ECOD

ECOD/Domains/e3lptA1

e3lptA1

UID: 000390844

PDB

Range: A:55-209
PDB: 3LPT chain A(all domains)
UniProt: P12497 (all domains)
Gene: gag-pol

Molecule: Integrase

3D Structure

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Related Domains

Browse other domains in rve →

Classification

AArchitecturemixed a+b and a/b(a.18)

XX-groupRibonuclease H-like(2484)

HH-groupRibonuclease H-like(2484.1)

TT-groupRibonuclease H-like(2484.1.1)

FFamilyrve(2484.1.1.9)

Ligands

in contact, ≤ 4 Å

(6-chloro-2-oxo-4-phenyl-1,2-dihydroquinolin-3-yl)acetic acid723
Calcium ionCA
metal
Chloride ionCL

Pfam Families

Integrase core domain

ClanCL0219RNase_H

External Links

ECOD PDB View: 3LPT RCSB PDB: 3LPT PDBe: 3LPT UniProt: P12497

Downloads

Download Domain PDB Download Domain FASTA Full PDB Structure

2-[3-[3-(2-hydroxyethoxy)propoxy]propoxy]ethanolP03

+ 2 additives (Sulfate ion, DI(HYDROXYETHYL)ETHER)

Sulfate ionSO4
DrugBank DB14546
DI(HYDROXYETHYL)ETHERPEG

Shown in the structure viewer. Drug annotations from DrugDomain.