ECODEvolutionary Classification of Protein Domains

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ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

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e3m8sA3 - ECOD Domain | ECOD

ECOD/Domains/e3m8sA3

e3m8sA3

UID: 000394839

PDB

Range: A:592-615,A:740-832
PDB: 3M8S chain A(all domains)
UniProt: P19821 (all domains)
Gene: polA

Molecule: DNA polymerase I, thermostable

3D Structure

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Related Domains

Browse other domains in DNA_pol_A →

Classification

AArchitecturea+b two layers(a.11)

XX-groupAlpha-beta plaits(304)

HH-groupAdenylyl and guanylyl cyclase catalytic domain-like(304.48)

TT-groupAdenylyl and guanylyl cyclase catalytic domain-like(304.48.1)

FFamilyDNA_pol_A(304.48.1.6)

Ligands

in contact, ≤ 4 Å

4'-methylthymidine 5'-(tetrahydrogen triphosphate)HXB
Magnesium ionMG
metal

+ 3 additives (Acetate, Glycerin, DI(HYDROXYETHYL)ETHER)

AcetateACT

Pfam Families

PF00476DNA_pol_A

DNA polymerase family A

External Links

ECOD PDB View: 3M8S RCSB PDB: 3M8S PDBe: 3M8S UniProt: P19821

Downloads

Download Domain PDB Download Domain FASTA Full PDB Structure

DrugBank DB14511

GlycerinGOL

DrugBank DB09462

DI(HYDROXYETHYL)ETHERPEG

Shown in the structure viewer. Drug annotations from DrugDomain.