ECODEvolutionary Classification of Protein Domains

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About ECOD

ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

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e3nbtE1 - ECOD Domain | ECOD

ECOD/Domains/e3nbtE1

e3nbtE1

UID: 000395400

PDB

Range: E:1-104
PDB: 3NBT chain E(all domains)
UniProt: P00004 (all domains)
Gene: CYCS

Molecule: Cytochrome c

3D Structure

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Related Domains

Browse other domains in Cytochrom_C →

Classification

AArchitecturealpha arrays(a.6)

XX-groupCytochrome c-like(107)

HH-groupCytochrome c(107.1)

TT-groupCytochrome c(107.1.1)

FFamilyCytochrom_C(107.1.1.1)

Ligands

in contact, ≤ 4 Å

Ferroheme CHEC
drugDrugBank DB03317within 5 Å only

+ 3 additives (Triethylene glycol, DI(HYDROXYETHYL)ETHER, Tetraethylene glycol)

Triethylene glycolPGE
DrugBank DB02327

Pfam Families

PF00034Cytochrom_C

Cytochrome c

ClanCL0318Cytochrome-c

External Links

ECOD PDB View: 3NBT RCSB PDB: 3NBT PDBe: 3NBT UniProt: P00004

Downloads

Download Domain PDB Download Domain FASTA Full PDB Structure

DI(HYDROXYETHYL)ETHERPEG

Tetraethylene glycolPG4

Shown in the structure viewer. Drug annotations from DrugDomain.