ECODEvolutionary Classification of Protein Domains

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ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

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e3a74C2 - ECOD Domain | ECOD

ECOD/Domains/e3a74C2

e3a74C2

UID: 000400822

PDB

Range: C:145-492
PDB: 3A74 chain C(all domains)
UniProt: Q9RHV9 (all domains)
Gene: lysS

Molecule: Lysyl-tRNA synthetase

3D Structure

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Related Domains

Browse other domains in tRNA-synt_2 →

Classification

AArchitecturea+b three layers(a.12)

XX-groupClass II aaRS and biotin synthetases(314)

HH-groupClass II aaRS and biotin synthetases(314.1)

TT-groupClass II aaRS and biotin synthetases(314.1.1)

FFamilytRNA-synt_2(314.1.1.1)

Ligands

in contact, ≤ 4 Å

2,6-Diamino-Hexanoic Acid AmideLYN
drugDrugBank DB03988
BIS(ADENOSINE)-5'-TETRAPHOSPHATEB4P
Magnesium ionMG

Pfam Families

PF00152tRNA-synt_2

tRNA synthetases class II (D, K and N)

ClanCL0040tRNA_synt_II

External Links

ECOD PDB View: 3A74 RCSB PDB: 3A74 PDBe: 3A74 UniProt: Q9RHV9

Downloads

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metal

Shown in the structure viewer. Drug annotations from DrugDomain.