ECODEvolutionary Classification of Protein Domains

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ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

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e3pkqC1 - ECOD Domain | ECOD

ECOD/Domains/e3pkqC1

e3pkqC1

UID: 000409934

PDB

Range: C:4-290
PDB: 3PKQ chain C(all domains)
UniProt: P26393 (all domains)
Gene: rmlA

Molecule: Glucose-1-phosphate thymidylyltransferase

3D Structure

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Related Domains

Browse other domains in NTP_transferase →

Classification

AArchitecturea/b three-layered sandwiches(a.17)

XX-groupNucleotide-diphospho-sugar transferases(7516)

HH-groupNucleotide-diphospho-sugar transferases(7516.1)

TT-groupNucleotide-diphospho-sugar transferases(7516.1.1)

FFamilyNTP_transferase(7516.1.1.1)

Ligands

in contact, ≤ 4 Å

2'-Deoxyguanosine-5'-TriphosphateDGT
drugDrugBank DB02181
Magnesium ionMG
metal

+ 1 additive (DI(HYDROXYETHYL)ETHER)

Pfam Families

PF00483NTP_transferase

Nucleotidyl transferase

ClanCL0110GT-A

External Links

ECOD PDB View: 3PKQ RCSB PDB: 3PKQ PDBe: 3PKQ UniProt: P26393

Downloads

Download Domain PDB Download Domain FASTA Full PDB Structure

DI(HYDROXYETHYL)ETHERPEG

Shown in the structure viewer. Drug annotations from DrugDomain.