ECODEvolutionary Classification of Protein Domains

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ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

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e3lk6A1 - ECOD Domain | ECOD

ECOD/Domains/e3lk6A1

e3lk6A1

UID: 000419989

PDB

Range: A:28-434
PDB: 3LK6 chain A(all domains)
UniProt: P40406 (all domains)
Gene: nagZ

Molecule: Lipoprotein ybbD

3D Structure

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Related Domains

Browse other domains in Glyco_hydro_3 →

Classification

AArchitecturea/b barrels(a.16)

XX-groupTIM beta/alpha-barrel(2002)

HH-groupTIM barrels(2002.1)

TT-groupTIM barrels(2002.1.1)

FFamilyGlyco_hydro_3(2002.1.1.39)

Ligands

in contact, ≤ 4 Å

Sodium ionNA
metal

+ 1 additive (DI(HYDROXYETHYL)ETHER)

DI(HYDROXYETHYL)ETHERPEG

Shown in the structure viewer. Drug annotations from DrugDomain.

Pfam Families

PF00933Glyco_hydro_3

Glycosyl hydrolase family 3 N terminal domain

ClanCL0036TIM_barrel

External Links

ECOD PDB View: 3LK6 RCSB PDB: 3LK6 PDBe: 3LK6 UniProt: P40406

Downloads

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