ECODEvolutionary Classification of Protein Domains

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ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

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e3r55A1 - ECOD Domain | ECOD

ECOD/Domains/e3r55A1

e3r55A1

UID: 000425575

PDB

Range: A:1-595
PDB: 3R55 chain A(all domains)
UniProt: A3F9D6 (all domains)

Molecule: Lactoperoxidase

3D Structure

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Related Domains

Browse other domains in An_peroxidase →

Classification

AArchitecturealpha complex topology(a.10)

XX-groupHeme-dependent peroxidases(136)

HH-groupHeme-dependent peroxidases(136.1)

TT-groupHeme-dependent peroxidases(136.1.1)

FFamilyAn_peroxidase(136.1.1.3)

Ligands

in contact, ≤ 4 Å

FerrohemeHEM
drugDrugBank DB18267
N-AcetylglucosamineNAG
drugDrugBank DB00141

Pfam Families

PF03098An_peroxidase

Animal haem peroxidase

ClanCL0617Peroxidase

External Links

ECOD PDB View: 3R55 RCSB PDB: 3R55 PDBe: 3R55 UniProt: A3F9D6

Downloads

Download Domain PDB Download Domain FASTA Full PDB Structure

Pyrazinamide

drugDrugBank DB00339

Calcium ionCA

metal

Iodide ionIOD

Thiocyanate ionSCN

Zinc ionZN

metal

(4R)-2-METHYLPENTANE-2,4-DIOLMRD

within 5 Å only

+ 3 additives (Glycerin, 1,2-ETHANEDIOL, DI(HYDROXYETHYL)ETHER)

GlycerinGOL
DrugBank DB09462
1,2-ETHANEDIOLEDO
DI(HYDROXYETHYL)ETHERPEG
within 5 Å only

Shown in the structure viewer. Drug annotations from DrugDomain.