ECODEvolutionary Classification of Protein Domains

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About ECOD

ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

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Q8DFB2_nD3 - ECOD Domain | ECOD

ECOD/Domains/Q8DFB2_nD3

Q8DFB2_nD3

UID: 004335098

AlphaFold

Range: 176-360
AlphaFold: AF-Q8DFB2
UniProt: Q8DFB2 (all domains)
Gene: rlmM

Protein: Ribosomal RNA large subunit methyltransferase M (EC 2.1.1.186) (23S rRNA (cytidine2498-2'-O)-methyltransferase) (23S rRNA 2'-O-ribose methyltransferase RlmM)

3D Structure

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Related Domains

Browse other domains in FtsJ →

Classification

AArchitecturea/b three-layered sandwiches(a.17)

XX-groupRossmann-like(2003)

HH-groupRossmann-related(2003.1)

TT-groupS-adenosyl-L-methionine-dependent methyltransferases(2003.1.5)

FFamilyFtsJ(2003.1.5.15)

Pfam Families

FtsJ-like methyltransferase

ClanCL0063NADP_Rossmann

External Links

AlphaFold DB: Q8DFB2 UniProt: Q8DFB2

Representative

This domain is classified based on similarity to:

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Full AlphaFold Structure (PDB)Full AlphaFold Structure (mmCIF)

Domain coordinates: residues 176-360