ECODEvolutionary Classification of Protein Domains

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ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

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e3tv1B2 - ECOD Domain | ECOD

ECOD/Domains/e3tv1B2

e3tv1B2

UID: 000437062

PDB

Range: B:185-279
PDB: 3TV1 chain B(all domains)
UniProt: P46849 (all domains)
Gene: rtcA

Molecule: RNA 3'-terminal phosphate cyclase

3D Structure

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Related Domains

Browse other domains in RTC_insert →

Classification

AArchitecturea+b three layers(a.12)

XX-groupThioredoxin-like(2485)

HH-groupRNA 3'-terminal phosphate cyclase, RPTC, insert domain(2485.2)

TT-groupRNA 3'-terminal phosphate cyclase, RPTC, insert domain(2485.2.1)

FFamilyRTC_insert(2485.2.1.1)

Ligands

in contact, ≤ 4 Å

Adenosine phosphateAMP
drugDrugBank DB00131

+ 3 additives (Glycerin, Sulfate ion, DI(HYDROXYETHYL)ETHER)

GlycerinGOL
DrugBank DB09462within 5 Å only

Pfam Families

PF05189RTC_insert

RNA 3'-terminal phosphate cyclase (RTC), insert domain

External Links

ECOD PDB View: 3TV1 RCSB PDB: 3TV1 PDBe: 3TV1 UniProt: P46849

Downloads

Download Domain PDB Download Domain FASTA Full PDB Structure

Sulfate ionSO4

DI(HYDROXYETHYL)ETHERPEG

within 5 Å only

Shown in the structure viewer. Drug annotations from DrugDomain.