ECODEvolutionary Classification of Protein Domains

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About ECOD

ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

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e2pg4B1 - ECOD Domain | ECOD

ECOD/Domains/e2pg4B1

e2pg4B1

UID: 000045994

PDB

Range: B:3-92
PDB: 2PG4 chain B(all domains)
UniProt: Q9YDN4 (all domains)
Gene: APE_0880a

Molecule: Uncharacterized protein

3D Structure

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Related Domains

Browse other domains in ArnR1-like_WHD →

Classification

AArchitecturealpha arrays(a.6)

XX-groupHTH(101)

HH-groupHTH(101.1)

TT-groupwinged helix domain(101.1.2)

FFamilyArnR1-like_WHD(101.1.2.221)

Ligands

in contact, ≤ 4 Å

Chloride ionCL

+ 3 additives (Citric acid, 1,2-ETHANEDIOL, DI(HYDROXYETHYL)ETHER)

Citric acidCIT
DrugBank DB04272
1,2-ETHANEDIOLEDO

Pfam Families

PF22166WHD_ArnR1

ArnR1-like, winged-helix domain

ClanCL0123HTH

External Links

ECOD PDB View: 2PG4 RCSB PDB: 2PG4 PDBe: 2PG4 UniProt: Q9YDN4

Downloads

Download Domain PDB Download Domain FASTA Full PDB Structure

DI(HYDROXYETHYL)ETHERPEG

Shown in the structure viewer. Drug annotations from DrugDomain.