ECODEvolutionary Classification of Protein Domains

Home Browse Search Download Help

About ECOD

ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

Quick Links

Browse Classification
Search
Download Data
Documentation
Privacy

Resources

Grishin Lab
UT Southwestern
RCSB PDB
AlphaFold DB
ecod.database@gmail.com

© 2014-2026 Grishin Lab / HHMI / UTSW

e1vj7A1 - ECOD Domain | ECOD

ECOD/Domains/e1vj7A1

e1vj7A1

UID: 000004781

RepresentativePDB

Range: A:5-196
PDB: 1VJ7 chain A(all domains)
UniProt: Q54089 (all domains)
Gene: relA

Molecule: Bifunctional RELA/SPOT

3D Structure

Loading viewer...

Related Domains

Browse other domains in HD_4 →

Classification

AArchitecturealpha complex topology(a.10)

XX-groupPDEase-like(131)

HH-groupHD-domain/PDEase-like(131.1)

TT-groupHD-domain/PDEase-like(131.1.1)

FFamilyHD_4(131.1.1.12)

Ligands

in contact, ≤ 4 Å

Guanosine-5'-DiphosphateGDP
drugDrugBank DB04315
MANGANESE (II) IONMN
metal

Shown in the structure viewer. Drug annotations from DrugDomain.

Pfam Families

HD domain

ClanCL0237HD_PDEase

External Links

ECOD PDB View: 1VJ7 RCSB PDB: 1VJ7 PDBe: 1VJ7 UniProt: Q54089

Downloads

Download Domain PDB Download Domain FASTA Full PDB Structure