ECODEvolutionary Classification of Protein Domains

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About ECOD

ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

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e8k5oM01 - ECOD Domain | ECOD

ECOD/Domains/e8k5oM01

e8k5oM01

UID: 004857633

PDB

Range: M:1-317
PDB: 8K5O chain M(all domains)

Molecule: Reaction center protein M chain

3D Structure

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Related Domains

Browse other domains in Photo_RC →

Classification

AArchitecturealpha bundles(a.7)

XX-groupBacterial photosystem II reaction centre L and M subunits-like(5037)

HH-groupBacterial photosystem II reaction centre L and M subunits-like(5037.1)

TT-groupBacterial photosystem II reaction centre L and M subunits-like(5037.1.1)

FFamilyPhoto_RC(5037.1.1.1)

Ligands

in contact, ≤ 4 Å

Trans-Geranyl Bacteriochlorophyll BA1LZM
Trans-Geranyl Bacteriopheophytin BA1LZP
2-O-octyl-beta-D-glucopyranoseBGL
CardiolipinCDL
FE (III) IONFE
metal
MENAQUINONE 8

Pfam Families

PF00124Photo_RC

Photosynthetic reaction centre protein

External Links

ECOD PDB View: 8K5O RCSB PDB: 8K5O PDBe: 8K5O

Downloads

Download Domain PDB Download Domain FASTA Full PDB Structure

(1R)-2-{[{[(2S)-2,3-DIHYDROXYPROPYL]OXY}(HYDROXY)PHOSPHORYL]OXY}-1-[(PALMITOYLOXY)METHYL]ETHYL (11E)-OCTADEC-11-ENOATEPGV

Unknown ligandUNL

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