ECODEvolutionary Classification of Protein Domains

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PDB 8K5O

56 chains39 ECOD domains

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3D Structure(domains colored, ligands/nucleic acids shown)

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Domains by Chain

Chain 1Beta subunit of light-harvesting 1view chain

1 domain

e8k5o11(1:1-48)

Chain 3Light-harvesting LHIview chain

1 domain

e8k5o301(3:1-55)

Chain 4Antenna complex alpha/beta subunit domain-containing proteinview chain

1 domain

e8k5o401(4:1-59)

Chain 6Antenna complex alpha/beta subunit domain-containing proteinview chain

1 domain

e8k5o61(6:1-53)

Chain 7Beta subunit of light-harvesting 1view chain

1 domain

e8k5o71(7:1-48)

Chain bAntenna complex alpha/beta subunit domain-containing proteinview chain

1 domain

e8k5ob1(b:1-53)

Chain cBeta subunit of light-harvesting 1view chain

1 domain

e8k5oc1(c:1-48)

Chain CPhotosynthetic reaction center cytochrome c subunitview chain

1 domain

e8k5oC01(C:35-346)

Chain eAntenna complex alpha/beta subunit domain-containing proteinview chain

1 domain

e8k5oe1(e:1-53)

Chain fBeta subunit of light-harvesting 1view chain

1 domain

e8k5of1(f:1-48)

Chain FAntenna complex alpha/beta subunit domain-containing proteinview chain

1 domain

e8k5oF1(F:1-53)

Chain GBeta subunit of light-harvesting 1view chain

1 domain

e8k5oG1(G:1-48)

Chain hAntenna complex alpha/beta subunit domain-containing proteinview chain

1 domain

e8k5oh1(h:1-53)

Chain HPhotosynthetic reaction center H subunitview chain

2 domains

e8k5oH01(H:1-41)e8k5oH02(H:42-273)

Chain iBeta subunit of light-harvesting 1view chain

1 domain

e8k5oi1(i:1-48)

Chain kAntenna complex alpha/beta subunit domain-containing proteinview chain

1 domain

e8k5ok1(k:1-53)

Chain KAntenna complex alpha/beta subunit domain-containing proteinview chain

1 domain

e8k5oK1(K:1-53)

Chain lBeta subunit of light-harvesting 1view chain

1 domain

e8k5ol1(l:1-48)

Chain LReaction center protein L chainview chain

1 domain

e8k5oL01(L:1-274)

Chain MReaction center protein M chainview chain

1 domain

e8k5oM01(M:1-317)

Chain nAntenna complex alpha/beta subunit domain-containing proteinview chain

1 domain

e8k5on1(n:1-53)

Chain NBeta subunit of light-harvesting 1view chain

1 domain

e8k5oN1(N:1-48)

Chain oBeta subunit of light-harvesting 1view chain

1 domain

e8k5oo1(o:1-48)

Chain PAntenna complex alpha/beta subunit domain-containing proteinview chain

1 domain

e8k5oP1(P:1-53)

Chain qAntenna complex alpha/beta subunit domain-containing proteinview chain

1 domain

e8k5oq1(q:1-53)

Chain QBeta subunit of light-harvesting 1view chain

1 domain

e8k5oQ1(Q:1-48)

Chain rBeta subunit of light-harvesting 1view chain

1 domain

e8k5or1(r:1-48)

Chain SAntenna complex alpha/beta subunit domain-containing proteinview chain

1 domain

e8k5oS1(S:1-53)

Chain tAntenna complex alpha/beta subunit domain-containing proteinview chain

1 domain

e8k5ot1(t:1-53)

Chain TBeta subunit of light-harvesting 1view chain

1 domain

e8k5oT1(T:1-48)

Chain uBeta subunit of light-harvesting 1view chain

1 domain

e8k5ou1(u:1-48)

Chain VAntenna complex alpha/beta subunit domain-containing proteinview chain

1 domain

e8k5oV1(V:1-53)

Chain wAntenna complex alpha/beta subunit domain-containing proteinview chain

1 domain

e8k5ow01(w:1-53)

Chain WBeta subunit of light-harvesting 1view chain

1 domain

e8k5oW1(W:1-48)

Chain xBeta subunit of light-harvesting 1view chain

1 domain

e8k5ox01(x:1-48)

Chain YAntenna complex alpha/beta subunit domain-containing proteinview chain

1 domain

e8k5oY1(Y:1-53)

Chain zAntenna complex alpha/beta subunit domain-containing proteinview chain

1 domain

e8k5oz1(z:1-53)

Chain ZBeta subunit of light-harvesting 1view chain

1 domain

e8k5oZ1(Z:1-48)

All Domains (39)

#	Chain	Domain ID	Range	Family	Classification
1	1	e8k5o11	1:1-48	5074.1.1.0	5074 → 5074.1 → 5074.1.1
2	3	e8k5o301	3:1-55	LHC	5074 → 5074.1 → 5074.1.1
3	4	e8k5o401	4:1-59	LHC	5074 → 5074.1 → 5074.1.1
4	6	e8k5o61	6:1-53	LHC	5074 → 5074.1 → 5074.1.1
5	7	e8k5o71	7:1-48	5074.1.1.0	5074 → 5074.1 → 5074.1.1
6	b	e8k5ob1	b:1-53	LHC	5074 → 5074.1 → 5074.1.1
7	c	e8k5oc1	c:1-48	5074.1.1.0	5074 → 5074.1 → 5074.1.1
8	C	e8k5oC01	C:35-346	CytoC_RC	139 → 139.3 → 139.3.1
9	e	e8k5oe1	e:1-53	LHC	5074 → 5074.1 → 5074.1.1
10	f	e8k5of1	f:1-48	5074.1.1.0	5074 → 5074.1 → 5074.1.1
11	F	e8k5oF1	F:1-53	LHC	5074 → 5074.1 → 5074.1.1
12	G	e8k5oG1	G:1-48	5074.1.1.0	5074 → 5074.1 → 5074.1.1
13	h	e8k5oh1	h:1-53	LHC	5074 → 5074.1 → 5074.1.1
14	H	e8k5oH01	H:1-41	PRCH	5002 → 5002.1 → 5002.1.1
15	H	e8k5oH02	H:42-273	Photosynthetic reaction centre, H-chain N-terminal region / PRC-barrel domain	4 → 4.6 → 4.6.1
16	i	e8k5oi1	i:1-48	5074.1.1.0	5074 → 5074.1 → 5074.1.1
17	k	e8k5ok1	k:1-53	LHC	5074 → 5074.1 → 5074.1.1
18	K	e8k5oK1	K:1-53	LHC	5074 → 5074.1 → 5074.1.1
19	l	e8k5ol1	l:1-48	5074.1.1.0	5074 → 5074.1 → 5074.1.1
20	L	e8k5oL01	L:1-274	Photo_RC	5037 → 5037.1 → 5037.1.1
21	M	e8k5oM01	M:1-317	Photo_RC	5037 → 5037.1 → 5037.1.1
22	n	e8k5on1	n:1-53	LHC	5074 → 5074.1 → 5074.1.1
23	N	e8k5oN1	N:1-48	5074.1.1.0	5074 → 5074.1 → 5074.1.1
24	o	e8k5oo1	o:1-48	5074.1.1.0	5074 → 5074.1 → 5074.1.1
25	P	e8k5oP1	P:1-53	LHC	5074 → 5074.1 → 5074.1.1
26	q	e8k5oq1	q:1-53	LHC	5074 → 5074.1 → 5074.1.1
27	Q	e8k5oQ1	Q:1-48	5074.1.1.0	5074 → 5074.1 → 5074.1.1
28	r	e8k5or1	r:1-48	5074.1.1.0	5074 → 5074.1 → 5074.1.1
29	S	e8k5oS1	S:1-53	LHC	5074 → 5074.1 → 5074.1.1
30	t	e8k5ot1	t:1-53	LHC	5074 → 5074.1 → 5074.1.1
31	T	e8k5oT1	T:1-48	5074.1.1.0	5074 → 5074.1 → 5074.1.1
32	u	e8k5ou1	u:1-48	5074.1.1.0	5074 → 5074.1 → 5074.1.1
33	V	e8k5oV1	V:1-53	LHC	5074 → 5074.1 → 5074.1.1
34	w	e8k5ow01	w:1-53	LHC	5074 → 5074.1 → 5074.1.1
35	W	e8k5oW1	W:1-48	5074.1.1.0	5074 → 5074.1 → 5074.1.1
36	x	e8k5ox01	x:1-48	5074.1.1.0	5074 → 5074.1 → 5074.1.1
37	Y	e8k5oY1	Y:1-53	LHC	5074 → 5074.1 → 5074.1.1
38	z	e8k5oz1	z:1-53	LHC	5074 → 5074.1 → 5074.1.1
39	Z	e8k5oZ1	Z:1-48	5074.1.1.0	5074 → 5074.1 → 5074.1.1

Visualization Legend

ECOD domains (colored by index)Unclassified protein regionsNucleic acids (RNA/DNA)Ligands/cofactors