ECODEvolutionary Classification of Protein Domains

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ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

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e8pnoA01 - ECOD Domain | ECOD

ECOD/Domains/e8pnoA01

e8pnoA01

UID: 004861232

PDB

Range: A:1-202
PDB: 8PNO chain A(all domains)

Molecule: Alpha-D-glucose 1-phosphate phosphatase YihX

3D Structure

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Related Domains

Browse other domains in Hydrolase, Hydrolase_like →

Classification

AArchitecturea/b three-layered sandwiches(a.17)

XX-groupHAD domain-like(2006)

HH-groupHAD domain-related(2006.1)

TT-groupHAD-like(2006.1.1)

FFamilyHydrolase, Hydrolase_like(2006.1.1.44)

Ligands

in contact, ≤ 4 Å

Calcium ionCA
metal
trifluoromagnesate monohydrateKQB
Magnesium ionMG
metal

+ 5 additives (1,2-ETHANEDIOL, Glycerol, Imidazole, …)

1,2-ETHANEDIOLEDO
Glycerol

Pfam Families

PF00702Hydrolase

haloacid dehalogenase-like hydrolase

ClanCL0137HAD

PF13242Hydrolase_like

HAD-hyrolase-like

ClanCL0137HAD

External Links

ECOD PDB View: 8PNO RCSB PDB: 8PNO PDBe: 8PNO

Downloads

Download Domain PDB Download Domain FASTA Full PDB Structure

ImidazoleIMD

DI(HYDROXYETHYL)ETHERPEG

Tetraethylene glycolPG4

Shown in the structure viewer.