ECODEvolutionary Classification of Protein Domains

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ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

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e9hmcB1 - ECOD Domain | ECOD

ECOD/Domains/e9hmcB1

e9hmcB1

UID: 004887736

PDB

Range: B:1-150
PDB: 9HMC chain B(all domains)

Molecule: Retinal rod rhodopsin-sensitive cGMP 3',5'-cyclic phosphodiesterase subunit delta

3D Structure

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Related Domains

Browse other domains in GMP_PDE_delta →

Classification

AArchitecturebeta sandwiches(a.3)

XX-groupImmunoglobulin-like beta-sandwich(11)

HH-groupImmunoglobulin-related(11.1)

TT-groupImmunoglobulin/Fibronectin type III/E set domains/PapD-like(11.1.1)

FFamilyGMP_PDE_delta(11.1.1.76)

Ligands

in contact, ≤ 4 Å

4-[3,4-dimethyl-2-(4-methylphenyl)-7-oxidanylidene-pyrazolo[3,4-d]pyridazin-6-yl]-~{N}-heptyl-~{N}-(piperidin-4-ylmethyl)butane-1-sulfonamideA1IWC

+ 1 additive (DI(HYDROXYETHYL)ETHER)

DI(HYDROXYETHYL)ETHERPEG

Shown in the structure viewer.

Pfam Families

PF05351GMP_PDE_delta

GMP-PDE, delta subunit

ClanCL0159E-set

External Links

ECOD PDB View: 9HMC RCSB PDB: 9HMC PDBe: 9HMC

Downloads

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