ECODEvolutionary Classification of Protein Domains

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ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

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e9ltiM1 - ECOD Domain | ECOD

ECOD/Domains/e9ltiM1

e9ltiM1

UID: 004888616

PDB

Range: M:4-323
PDB: 9LTI chain M(all domains)

Molecule: Reaction center protein M chain

3D Structure

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Related Domains

Browse other domains in Photo_RC →

Classification

AArchitecturealpha bundles(a.7)

XX-groupBacterial photosystem II reaction centre L and M subunits-like(5037)

HH-groupBacterial photosystem II reaction centre L and M subunits-like(5037.1)

TT-groupBacterial photosystem II reaction centre L and M subunits-like(5037.1.1)

FFamilyPhoto_RC(5037.1.1.1)

Ligands

in contact, ≤ 4 Å

Octadecane8K6
Bacteriochlorophyll aBCL
Bacteriopheophytin aBPH
FE (III) IONFE
metal
(6~{E},8~{E},10~{E},12~{E},14~{E},16~{E},18~{E},20~{E},22~{E},24~{E},26~{E})-2,31-dimethoxy-2,6,10,14,19,23,27,31-octamethyl-dotriaconta-6,8,10,12,14,16,18,20,22,24,26-undecaeneH4X

Pfam Families

PF00124Photo_RC

Photosynthetic reaction centre protein

External Links

ECOD PDB View: 9LTI RCSB PDB: 9LTI PDBe: 9LTI

Downloads

Download Domain PDB Download Domain FASTA Full PDB Structure

DI-PALMITOYL-3-SN-PHOSPHATIDYLETHANOLAMINEPEF

(1R)-2-{[{[(2S)-2,3-DIHYDROXYPROPYL]OXY}(HYDROXY)PHOSPHORYL]OXY}-1-[(PALMITOYLOXY)METHYL]ETHYL (11E)-OCTADEC-11-ENOATEPGV

Ubiquinone-8UQ8

+ 2 additives (Dodecyl-beta-d-maltoside, Phosphate ion)

Dodecyl-beta-d-maltosideLMT
Phosphate ionPO4

Shown in the structure viewer.