ECODEvolutionary Classification of Protein Domains

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ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

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e9hyuB1 - ECOD Domain | ECOD

ECOD/Domains/e9hyuB1

e9hyuB1

UID: 005084662

PDB

Range: B:325-1139
PDB: 9HYU chain B(all domains)

Molecule: Photosystem I protein (PsaB)

3D Structure

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Related Domains

Browse other domains in PsaA_PsaB →

Classification

AArchitecturealpha bundles(a.7)

XX-groupBacterial photosystem II reaction centre L and M subunits-like(5037)

HH-groupBacterial photosystem II reaction centre L and M subunits-like(5037.1)

TT-groupBacterial photosystem II reaction centre L and M subunits-like(5037.1.1)

FFamilyPsaA_PsaB(5037.1.1.2)

Ligands

in contact, ≤ 4 Å

[(2~{R})-3-[(2~{S},3~{R},4~{R},5~{R},6~{R})-6-(hexadecanoyloxymethyl)-3,4,5-tris(oxidanyl)oxan-2-yl]oxy-2-octadecanoyloxy-propyl] octadecanoateA1I05
[(1~{R},5~{S})-3,3,5-trimethyl-5-oxidanyl-4-[(3~{E},5~{E},7~{E},9~{E},11~{E},13~{E},15~{E},17~{Z})-3,7,12,16-tetramethyl-17-oxidanyl-19-oxidanylidene-19-[(1~{R},4~{S})-1,2,2-trimethyl-4-oxidanyl-cyclopentyl]nonadeca-1,3,5,7,9,11,13,15,17-nonaenylidene]cyclohexyl] ethanoateA1L6D
Beta-caroteneBCR
Chlorophyll a isomerCL0
Chlorophyll a

Pfam Families

PF00223PsaA_PsaB

Photosystem I psaA/psaB protein

External Links

ECOD PDB View: 9HYU RCSB PDB: 9HYU PDBe: 9HYU

Downloads

Download Domain PDB Full PDB Structure

DIGALACTOSYL DIACYL GLYCEROL (DGDG)DGD

1,2-DISTEAROYL-MONOGALACTOSYL-DIGLYCERIDELMG

PhylloquinonePQN

Iron/sulfur clusterSF4

(3S,5R,6S,3'S,5'R,6'S)-5,6,5',6'-DIEPOXY-5,6,5',6'- TETRAHYDRO-BETA,BETA-CAROTENE-3,3'-DIOLXAT

+ 1 additive (Dodecyl-beta-d-maltoside)

Dodecyl-beta-d-maltosideLMT

Shown in the structure viewer.