ECODEvolutionary Classification of Protein Domains

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ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

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e8jm2A1 - ECOD Domain | ECOD

ECOD/Domains/e8jm2A1

e8jm2A1

UID: 005150689

PDB

Range: A:35-249,A:251-302,A:432-437,A:440-443,A:479-516
PDB: 8JM2 chain A(all domains)

Molecule: (R)-mandelonitrile lyase

3D Structure

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Related Domains

Browse other domains in GMC_oxred_N →

Classification

AArchitecturea/b three-layered sandwiches(a.17)

XX-groupRossmann-like(2003)

HH-groupRossmann-related(2003.1)

TT-groupFAD/NAD(P)-binding domain(2003.1.2)

FFamilyGMC_oxred_N(2003.1.2.2)

Ligands

in contact, ≤ 4 Å

Flavin-adenine dinucleotideFAD
2,2-dimethyl-4H-1,3-benzodioxine-6-carbaldehydeFQ3
2-acetamido-2-deoxy-beta-D-glucopyranoseNAG

+ 3 additives (1,2-ETHANEDIOL, DI(HYDROXYETHYL)ETHER, Triethylene glycol)

1,2-ETHANEDIOLEDO
DI(HYDROXYETHYL)ETHERPEG

Pfam Families

PF00732GMC_oxred_N

GMC oxidoreductase

ClanCL0063NADP_Rossmann

External Links

ECOD PDB View: 8JM2 RCSB PDB: 8JM2 PDBe: 8JM2

Downloads

Download Domain PDB Full PDB Structure

Triethylene glycol

Shown in the structure viewer.