ECODEvolutionary Classification of Protein Domains

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ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

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e8redD2 - ECOD Domain | ECOD

ECOD/Domains/e8redD2

e8redD2

UID: 005177135

PDB

Range: D:345-376,D:417-497
PDB: 8RED chain D(all domains)

Molecule: DNA-directed RNA polymerase subunit beta'

3D Structure

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Related Domains

Browse other domains in RNA_pol_Rpb1_2 →

Classification

AArchitecturebeta barrels(a.1)

XX-groupcradle loop barrel(1)

HH-groupRIFT-related(1.1)

TT-groupdouble psi(1.1.2)

FFamilyRNA_pol_Rpb1_2(1.1.2.2)

Ligands

in contact, ≤ 4 Å

Magnesium ionMG
metal

Shown in the structure viewer.

Pfam Families

PF00623RNA_pol_Rpb1_2

RNA polymerase Rpb1, domain 2

External Links

ECOD PDB View: 8RED RCSB PDB: 8RED PDBe: 8RED

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Full PDB Structure