PDB 8RED
ELECTRON MICROSCOPY9 chains30 ECOD domains
3D Structure(domains colored, ligands/nucleic acids shown)
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Domains by Chain
3 domains
3 domains
10 domains
10 domains
1 domain
3 domains
All Domains (30)
| # | Chain | Domain ID | Range | Family | Classification |
|---|---|---|---|---|---|
| 1 | A | e8redA1 | A:1-50,A:172-241 | RNA_pol_L | 305 → 305.1 → 305.1.1 |
| 2 | A | e8redA2 | A:51-171 | RNA_pol_A_bac | 240 → 240.2 → 240.2.1 |
| 3 | A | e8redA3 | A:242-321 | RNA_pol_A_CTD | 102 → 102.1 → 102.1.1 |
| 4 | B | e8redB1 | B:1-50,B:172-241 | RNA_pol_L | 305 → 305.1 → 305.1.1 |
| 5 | B | e8redB2 | B:51-171 | RNA_pol_A_bac | 240 → 240.2 → 240.2.1 |
| 6 | B | e8redB3 | B:242-321 | RNA_pol_A_CTD | 102 → 102.1 → 102.1.1 |
| 7 | C | e8redC1 | C:939-1044 | 3681.1.1.0 | 3681 → 3681.1 → 3681.1.1 |
| 8 | C | e8redC2 | C:578-712 | RNA_pol_Rpb2_45 | 4042 → 4042.1 → 4042.1.1 |
| 9 | C | e8redC3 | C:226-234,C:289-342 | 275.1.1.0 | 275 → 275.1 → 275.1.1 |
| 10 | C | e8redC4 | C:791-827,C:1063-1239 | RNA_pol_Rpb2_6 | 1 → 1.1 → 1.1.2 |
| 11 | C | e8redC5 | C:1240-1341 | RNA_pol_Rpb2_6,RNA_pol_Rpb2_7 | 4043 → 4043.1 → 4043.1.1 |
| 12 | C | e8redC6 | C:152-225,C:343-451 | RNA_pol_Rpb2_2 | 4041 → 4041.1 → 4041.1.1 |
| 13 | C | e8redC7 | C:235-288 | 275.1.1.0 | 275 → 275.1 → 275.1.1 |
| 14 | C | e8redC8 | C:713-790 | RNA_pol_Rpb2_6 | 325 → 325.1 → 325.1.7 |
| 15 | C | e8redC9 | C:2-151,C:452-577 | RNA_pol_Rpb2_1,RNA_pol_Rpb2_3 | 4010 → 4010.1 → 4010.1.1 |
| 16 | C | e8redC10 | C:828-890,C:915-938,C:1045-1062 | RNA_pol_Rpb2_6 | 325 → 325.1 → 325.1.7 |
| 17 | D | e8redD1 | D:172-344 | RNA_pol_Rpb1_1 | 4246 → 4246.1 → 4246.1.1 |
| 18 | D | e8redD2 | D:345-376,D:417-497 | RNA_pol_Rpb1_2 | 1 → 1.1 → 1.1.2 |
| 19 | D | e8redD3 | D:377-416 | 4951.1.1.0 | 4951 → 4951.1 → 4951.1.1 |
| 20 | D | e8redD4 | D:498-635 | RNA_pol_Rpb1_3 | 4959 → 4959.1 → 4959.1.1 |
| 21 | D | e8redD5 | D:636-808 | RNA_pol_Rpb1_5,RNA_pol_Rpb1_4 | 4958 → 4958.1 → 4958.1.1 |
| 22 | D | e8redD6 | D:809-935 | RNA_pol_Rpb1_5 | 275 → 275.1 → 275.1.1 |
| 23 | D | e8redD7 | D:936-1020 | 325.1.7.0 | 325 → 325.1 → 325.1.7 |
| 24 | D | e8redD8 | D:1021-1125 | 325.1.7.0 | 325 → 325.1 → 325.1.7 |
| 25 | D | e8redD9 | D:1173-1210 | 325.1.7.0 | 325 → 325.1 → 325.1.7 |
| 26 | D | e8redD10 | D:1211-1372 | RNA_pol_Rpb1_5 | 275 → 275.1 → 275.1.1 |
| 27 | E | e8redE1 | E:1-74 | 152.1.1.0 | 152 → 152.1 → 152.1.1 |
| 28 | M | e8redM01 | M:136-202 | Sigma54_CBD | 101 → 101.1 → 101.1.20 |
| 29 | M | e8redM02 | M:264-410 | Sigma-54, DNA binding domain / Sigma-54 factor, core binding domain | 101 → 101.1 → 101.1.1 |
| 30 | M | e8redM03 | M:411-472 | Sigma54_DBD | 101 → 101.1 → 101.1.1 |
Visualization Legend
ECOD domains (colored by index)Unclassified protein regionsNucleic acids (RNA/DNA)Ligands/cofactors