ECODEvolutionary Classification of Protein Domains

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About ECOD

ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

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e8redD6 - ECOD Domain | ECOD

ECOD/Domains/e8redD6

e8redD6

UID: 005177139

PDB

Range: D:809-935
PDB: 8RED chain D(all domains)

Molecule: DNA-directed RNA polymerase subunit beta'

3D Structure

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Related Domains

Browse other domains in RNA_pol_Rpb1_5 →

Classification

AArchitecturea+b two layers(a.11)

XX-groupMoeA-I/Ornithine decarboxylase-C/Reverse ferredoxin-like domain in RNA-polymerase(275)

HH-groupMoeA-I/Ornithine decarboxylase-C/Reverse ferredoxin-like domain in RNA-polymerase(275.1)

TT-groupMoeA-I/Ornithine decarboxylase-C/Reverse ferredoxin-like domain in RNA-polymerase(275.1.1)

FFamilyRNA_pol_Rpb1_5(275.1.1.4)

Ligands

in contact, ≤ 4 Å

Zinc ionZN
metal

Shown in the structure viewer.

Pfam Families

PF04998RNA_pol_Rpb1_5

RNA polymerase Rpb1, domain 5

External Links

ECOD PDB View: 8RED RCSB PDB: 8RED PDBe: 8RED

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Full PDB Structure