ECODEvolutionary Classification of Protein Domains

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ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

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e8rnnB1 - ECOD Domain | ECOD

ECOD/Domains/e8rnnB1

e8rnnB1

UID: 005179357

PDB

Range: B:1-104
PDB: 8RNN chain B(all domains)

Molecule: Unspecific peroxygenase

3D Structure

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Related Domains

Browse other domains in Peroxidase_2 →

Classification

AArchitecturealpha arrays(a.6)

XX-groupEF-hand(108)

HH-groupCloroperoxidase(108.3)

TT-groupCloroperoxidase(108.3.1)

FFamilyPeroxidase_2(108.3.1.1)

Ligands

in contact, ≤ 4 Å

Protoporphyrin ix containing feHEM
Magnesium ionMG
metal
2-acetamido-2-deoxy-beta-D-glucopyranoseNAG
17,21-DIHYDROXYPREGNA-1,4-DIENE-3,11,20-TRIONEPDN

+ 3 additives (Dimethyl sulfoxide, DI(HYDROXYETHYL)ETHER, Sulfate ion)

Dimethyl sulfoxide

Pfam Families

PF01328Peroxidase_2

Peroxidase, family 2

External Links

ECOD PDB View: 8RNN RCSB PDB: 8RNN PDBe: 8RNN

Downloads

Download Domain PDB Full PDB Structure

DI(HYDROXYETHYL)ETHERPEG

Sulfate ionSO4

Shown in the structure viewer.