ECODEvolutionary Classification of Protein Domains

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About ECOD

ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

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e8rtlC1 - ECOD Domain | ECOD

ECOD/Domains/e8rtlC1

e8rtlC1

UID: 005180654

PDB

Range: C:680-822
PDB: 8RTL chain C(all domains)

Molecule: Arsenite oxidase subunit AioA

3D Structure

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Related Domains

Browse other domains in Molydop_binding →

Classification

AArchitecturebeta barrels(a.1)

XX-groupcradle loop barrel(1)

HH-groupRIFT-related(1.1)

TT-groupdouble psi(1.1.2)

FFamilyMolydop_binding(1.1.2.4)

Ligands

in contact, ≤ 4 Å

MOLYBDENUM(IV) ION4MO
metal
2-AMINO-5,6-DIMERCAPTO-7-METHYL-3,7,8A,9-TETRAHYDRO-8-OXA-1,3,9,10-TETRAAZA-ANTHRACEN-4-ONE GUANOSINE DINUCLEOTIDEMGD
Sodium ionNA
metal
1-ETHOXY-2-(2-ETHOXYETHOXY)ETHANEP4G

+ 3 additives (Pentaethylene glycol, 1,2-ETHANEDIOL, DI(HYDROXYETHYL)ETHER)

Pfam Families

PF01568Molydop_binding

Molydopterin dinucleotide binding domain

ClanCL0199DPBB

External Links

ECOD PDB View: 8RTL RCSB PDB: 8RTL PDBe: 8RTL

Downloads

Download Domain PDB Full PDB Structure

Pentaethylene glycol1PE
1,2-ETHANEDIOLEDO
DI(HYDROXYETHYL)ETHERPEG

Shown in the structure viewer.