ECODEvolutionary Classification of Protein Domains

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About ECOD

ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

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e8tvtB1 - ECOD Domain | ECOD

ECOD/Domains/e8tvtB1

e8tvtB1

UID: 005194575

PDB

Range: B:4-79
PDB: 8TVT chain B(all domains)
UniProt: Q9HD34 (all domains)
Gene: LYRM4

Molecule: LYR motif-containing protein 4

3D Structure

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Related Domains

Browse other domains in Complex1_LYR →

Classification

AArchitecturealpha bundles(a.7)

XX-groupLYR protein(1128)

HH-groupLYR protein(1128.1)

TT-groupLYR protein(1128.1.1)

FFamilyComplex1_LYR(1128.1.1.1)

Ligands

in contact, ≤ 4 Å

S-[2-({N-[(2R)-2-hydroxy-3,3-dimethyl-4-(phosphonooxy)butanoyl]-beta-alanyl}amino)ethyl] dodecanethioate8Q1
{[-(BIS-CARBOXYMETHYL-AMINO)-ETHYL]-CARBOXYMETHYL-AMINO}-ACETIC ACIDEDT

+ 5 additives (1,2-ETHANEDIOL, Glycerol, 2-(N-MORPHOLINO)-ETHANESULFONIC ACID, …)

1,2-ETHANEDIOLEDO
GlycerolGOL
2-(N-MORPHOLINO)-ETHANESULFONIC ACIDMES

Pfam Families

PF05347Complex1_LYR

Complex 1 protein (LYR family)

ClanCL0491LYR-like

External Links

ECOD PDB View: 8TVT RCSB PDB: 8TVT PDBe: 8TVT UniProt: Q9HD34

Downloads

Download Domain PDB Full PDB Structure

DI(HYDROXYETHYL)ETHERPEG

Triethylene glycolPGE

Shown in the structure viewer.