ECODEvolutionary Classification of Protein Domains

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ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

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e8wtiB2 - ECOD Domain | ECOD

ECOD/Domains/e8wtiB2

e8wtiB2

UID: 005225609

PDB

Range: B:1-186
PDB: 8WTI chain B(all domains)

Molecule: 3C-like proteinase nsp5

3D Structure

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Related Domains

Browse other domains in Peptidase_C30 →

Classification

AArchitecturebeta barrels(a.1)

XX-groupcradle loop barrel(1)

HH-groupRIFT-related(1.1)

TT-groupFMN-binding split barrel(1.1.5)

FFamilyPeptidase_C30(1.1.5.19)

Ligands

in contact, ≤ 4 Å

~{N}-[(1~{R})-1-cyclohexyl-2-[[(2~{R})-3-methoxy-1-oxidanylidene-1-[[1-[(1~{S})-1-oxidanyl-2-oxidanylidene-2-(1,3-thiazol-2-ylmethylamino)ethyl]cyclobutyl]amino]propan-2-yl]amino]-2-oxidanylidene-ethyl]-4,4-bis(fluoranyl)cyclohexane-1-carboxamideX1Z

+ 2 additives (DI(HYDROXYETHYL)ETHER, Sulfate ion)

DI(HYDROXYETHYL)ETHERPEG
Sulfate ionSO4

Shown in the structure viewer.

Pfam Families

PF05409Peptidase_C30

Coronavirus endopeptidase C30

ClanCL0124Peptidase_PA

External Links

ECOD PDB View: 8WTI RCSB PDB: 8WTI PDBe: 8WTI

Downloads

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