ECODEvolutionary Classification of Protein Domains

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ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

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e8xk9D3 - ECOD Domain | ECOD

ECOD/Domains/e8xk9D3

e8xk9D3

UID: 005229876

PDB

Range: D:307-331,D:456-538
PDB: 8XK9 chain D(all domains)

Molecule: DNA polymerase I, thermostable

3D Structure

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Related Domains

Browse other domains in DNA_pol_A →

Classification

AArchitecturea+b two layers(a.11)

XX-groupAlpha-beta plaits(304)

HH-groupAdenylyl and guanylyl cyclase catalytic domain-like(304.48)

TT-groupAdenylyl and guanylyl cyclase catalytic domain-like(304.48.1)

FFamilyDNA_pol_A(304.48.1.6)

Ligands

in contact, ≤ 4 Å

[[(2~{R},3~{R},4~{R},5~{R})-5-(2-azanyl-6-oxidanylidene-1~{H}-purin-9-yl)-4-methoxy-3-oxidanyl-oxolan-2-yl]methoxy-oxidanyl-phosphoryl] phosphono hydrogen phosphateA1LWE
Magnesium ionMG
metal

+ 1 additive (DI(HYDROXYETHYL)ETHER)

DI(HYDROXYETHYL)ETHERPEG

Shown in the structure viewer.

Pfam Families

PF00476DNA_pol_A

DNA polymerase family A

External Links

ECOD PDB View: 8XK9 RCSB PDB: 8XK9 PDBe: 8XK9

Downloads

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