ECODEvolutionary Classification of Protein Domains

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About ECOD

ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

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e8zeeD1 - ECOD Domain | ECOD

ECOD/Domains/e8zeeD1

e8zeeD1

UID: 005246033

PDB

Range: D:5-352
PDB: 8ZEE chain D(all domains)
UniProt: P06007 (all domains)
Gene: psbD

Molecule: Photosystem II D2 protein

3D Structure

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Related Domains

Browse other domains in Photo_RC →

Classification

AArchitecturealpha bundles(a.7)

XX-groupBacterial photosystem II reaction centre L and M subunits-like(5037)

HH-groupBacterial photosystem II reaction centre L and M subunits-like(5037.1)

TT-groupBacterial photosystem II reaction centre L and M subunits-like(5037.1.1)

FFamilyPhoto_RC(5037.1.1.1)

Ligands

in contact, ≤ 4 Å

Beta-caroteneBCR
Chlorophyll aCLA
DIGALACTOSYL DIACYL GLYCEROL (DGDG)DGD
FE (II) IONFE2
metal
1,2-DIPALMITOYL-PHOSPHATIDYL-GLYCEROLELHG
1,2-DISTEAROYL-MONOGALACTOSYL-DIGLYCERIDE

Pfam Families

PF00124Photo_RC

Photosynthetic reaction centre protein

External Links

ECOD PDB View: 8ZEE RCSB PDB: 8ZEE PDBe: 8ZEE UniProt: P06007

Downloads

Download Domain PDB Full PDB Structure

Pheophytin aPHO

2,3-DIMETHYL-5-(3,7,11,15,19,23,27,31,35-NONAMETHYL-2,6,10,14,18,22,26,30,34-HEXATRIACONTANONAENYL-2,5-CYCLOHEXADIENE-1,4-DIONE-2,3-DIMETHYL-5-SOLANESYL-1,4-BENZOQUINONEPL9

1,2-DI-O-ACYL-3-O-[6-DEOXY-6-SULFO-ALPHA-D-GLUCOPYRANOSYL]-SN-GLYCEROLSQD

Rrr-alpha-tocopherylquinoneVTQ

+ 1 additive (Bicarbonate ion)

Bicarbonate ionBCT

Shown in the structure viewer.