ECODEvolutionary Classification of Protein Domains

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ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

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e9do3A2 - ECOD Domain | ECOD

ECOD/Domains/e9do3A2

e9do3A2

UID: 005270888

PDB

Range: A:64-318
PDB: 9DO3 chain A(all domains)
UniProt: P0DTD1 (all domains)
Gene: rep

Molecule: Papain-like protease nsp3

3D Structure

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Related Domains

Browse other domains in CoV_peptidase →

Classification

AArchitecturea+b complex topology(a.14)

XX-groupCysteine proteinases-like(219)

HH-groupCysteine proteinases(219.1)

TT-groupCysteine proteinases(219.1.1)

FFamilyCoV_peptidase(219.1.1.43)

Ligands

in contact, ≤ 4 Å

5-[(3S)-3,4-dimethylpiperazin-1-yl]-2-methyl-N-{(1R)-1-[(2M)-2-(1-methyl-1H-pyrazol-4-yl)quinolin-4-yl]ethyl}benzamideA1BEF
Chloride ionCL
Zinc ionZN
metal

+ 3 additives (Acetate ion, 1,2-ETHANEDIOL, DI(HYDROXYETHYL)ETHER)

Acetate ionACT
1,2-ETHANEDIOL

Pfam Families

PF08715CoV_peptidase

Coronavirus papain-like peptidase

ClanCL0125Peptidase_CA

External Links

ECOD PDB View: 9DO3 RCSB PDB: 9DO3 PDBe: 9DO3 UniProt: P0DTD1

Downloads

Download Domain PDB Full PDB Structure

DI(HYDROXYETHYL)ETHERPEG

Shown in the structure viewer.