ECODEvolutionary Classification of Protein Domains

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About ECOD

ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

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e9gv2B2 - ECOD Domain | ECOD

ECOD/Domains/e9gv2B2

e9gv2B2

UID: 005293598

PDB

Range: B:187-304
PDB: 9GV2 chain B(all domains)
UniProt: P0DTD1 (all domains)
Gene: rep

Molecule: 3C-like proteinase nsp5

3D Structure

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Related Domains

Browse other domains in Peptidase_C30 →

Classification

AArchitecturealpha arrays(a.6)

XX-groupCoronavirus main proteinase (3Cl-pro, putative coronavirus nsp2) C-terminal domain(6001)

HH-groupCoronavirus main proteinase (3Cl-pro, putative coronavirus nsp2) C-terminal domain(6001.1)

TT-groupCoronavirus main proteinase (3Cl-pro, putative coronavirus nsp2) C-terminal domain(6001.1.1)

FFamilyPeptidase_C30(6001.1.1.1)

Ligands

in contact, ≤ 4 Å

(2S)-2-[2-(3-methoxyphenoxy)ethanoylamino]-4-methyl-N-[(2S)-3-oxidanylidene-1-phenyl-pentan-2-yl]pentanamideA1IPK
Sodium ionNA
metal

+ 3 additives (Dimethyl sulfoxide, 1,2-ETHANEDIOL, DI(HYDROXYETHYL)ETHER)

Dimethyl sulfoxideDMS
1,2-ETHANEDIOLEDO
DI(HYDROXYETHYL)ETHER

Pfam Families

PF05409Peptidase_C30

Coronavirus endopeptidase C30

ClanCL0124Peptidase_PA

External Links

ECOD PDB View: 9GV2 RCSB PDB: 9GV2 PDBe: 9GV2 UniProt: P0DTD1

Downloads

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