ECODEvolutionary Classification of Protein Domains

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About ECOD

ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

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e9h4tB2 - ECOD Domain | ECOD

ECOD/Domains/e9h4tB2

e9h4tB2

UID: 005294618

PDB

Range: B:137-154,B:157-174,B:183-232,B:244-248,B:442-442,B:445-459,B:468-472,B:476-606,B:628-663,B:667-680,B:684-709,B:717-717
PDB: 9H4T chain B(all domains)

Molecule: Trimethylamine-N-oxide reductase 1

3D Structure

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Related Domains

Browse other domains in Molybdopterin →

Classification

AArchitecturea/b three-layered sandwiches(a.17)

XX-groupRossmann-like(2003)

HH-groupFormate dehydrogenase/DMSO reductase, domains 2 and 3(2003.2)

TT-groupFormate dehydrogenase/DMSO reductase, domains 2 and 3(2003.2.1)

FFamilyMolybdopterin(2003.2.1.1)

Ligands

in contact, ≤ 4 Å

MOLYBDENUM(VI) ION6MO
metal
2-AMINO-5,6-DIMERCAPTO-7-METHYL-3,7,8A,9-TETRAHYDRO-8-OXA-1,3,9,10-TETRAAZA-ANTHRACEN-4-ONE GUANOSINE DINUCLEOTIDEPGD

+ 3 additives (Pentaethylene glycol, DI(HYDROXYETHYL)ETHER, Triethylene glycol)

Pentaethylene glycol1PE
DI(HYDROXYETHYL)ETHERPEG
Triethylene glycol

Pfam Families

PF00384Molybdopterin

Molybdopterin oxidoreductase

External Links

ECOD PDB View: 9H4T RCSB PDB: 9H4T PDBe: 9H4T

Downloads

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