ECODEvolutionary Classification of Protein Domains

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ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

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e9kzhL1 - ECOD Domain | ECOD

ECOD/Domains/e9kzhL1

e9kzhL1

UID: 005306168

PDB

Range: L:2-275
PDB: 9KZH chain L(all domains)

Molecule: Reaction center protein L chain

3D Structure

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Related Domains

Browse other domains in Photo_RC →

Classification

AArchitecturealpha bundles(a.7)

XX-groupBacterial photosystem II reaction centre L and M subunits-like(5037)

HH-groupBacterial photosystem II reaction centre L and M subunits-like(5037.1)

TT-groupBacterial photosystem II reaction centre L and M subunits-like(5037.1.1)

FFamilyPhoto_RC(5037.1.1.1)

Ligands

in contact, ≤ 4 Å

Trans-Geranyl BACTERIOCHLOROPHYLL A07D
Trans-Geranyl BACTERIOPHEOPHYTIN A08I
Octadecane8K6
CardiolipinCDL
FE (III) IONFE
metal
DI-PALMITOYL-3-SN-PHOSPHATIDYLETHANOLAMINE

Pfam Families

PF00124Photo_RC

Photosynthetic reaction centre protein

External Links

ECOD PDB View: 9KZH RCSB PDB: 9KZH PDBe: 9KZH

Downloads

Download Domain PDB Full PDB Structure

(1R)-2-{[{[(2S)-2,3-DIHYDROXYPROPYL]OXY}(HYDROXY)PHOSPHORYL]OXY}-1-[(PALMITOYLOXY)METHYL]ETHYL (11E)-OCTADEC-11-ENOATEPGV

2-azanyl-5-[(2~{E},6~{E},8~{E},10~{E},12~{E},14~{E},18~{E},22~{E},26~{E},30~{E},34~{E})-3,7,11,15,19,23,27,31,35,39-decamethyltetraconta-2,6,8,10,12,14,18,22,26,30,34,38-dodecaenyl]-3-methoxy-6-methyl-cyclohexa-2,5-diene-1,4-dioneRQ0

UBIQUINONE-10U10

+ 1 additive (Dodecyl-beta-d-maltoside)

Dodecyl-beta-d-maltosideLMT

Shown in the structure viewer.