ECODEvolutionary Classification of Protein Domains

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ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

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e9sdfA2 - ECOD Domain | ECOD

ECOD/Domains/e9sdfA2

e9sdfA2

UID: 005328926

PDB

Range: A:6-347
PDB: 9SDF chain A(all domains)
UniProt: P83453 (all domains)
Gene: tyrS

Molecule: Tyrosine--tRNA ligase

3D Structure

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Related Domains

Browse other domains in tRNA-synt_1b →

Classification

AArchitecturea/b three-layered sandwiches(a.17)

XX-groupHUP domain-like(2005)

HH-groupHUP domains(2005.1)

TT-groupHUP domains(2005.1.1)

FFamilytRNA-synt_1b(2005.1.1.2)

Ligands

in contact, ≤ 4 Å

Adenosine monophosphateAMP
TyrosineTYR

+ 4 additives (Pentaethylene glycol, DI(HYDROXYETHYL)ETHER, Triethylene glycol, …)

Pentaethylene glycol1PE
DI(HYDROXYETHYL)ETHERPEG
Triethylene glycolPGE
Sulfate ion

Pfam Families

PF00579tRNA-synt_1b

tRNA synthetases class I (W and Y)

ClanCL0039HUP

External Links

ECOD PDB View: 9SDF RCSB PDB: 9SDF PDBe: 9SDF UniProt: P83453

Downloads

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