ECODEvolutionary Classification of Protein Domains

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ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

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e9yc0D2 - ECOD Domain | ECOD

ECOD/Domains/e9yc0D2

e9yc0D2

UID: 005332790

PDB

Range: D:1-25,D:202-519
PDB: 9YC0 chain D(all domains)

Molecule: M17 leucyl aminopeptidase

3D Structure

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Related Domains

Browse other domains in Peptidase_M17 →

Classification

AArchitecturea/b three-layered sandwiches(a.17)

XX-groupPhosphorylase/hydrolase-like(2011)

HH-groupZn-dependent exopeptidases(2011.1)

TT-groupZn-dependent exopeptidases(2011.1.1)

FFamilyPeptidase_M17(2011.1.1.3)

Ligands

in contact, ≤ 4 Å

N-[(1R)-1-(1,3-benzothiazol-5-yl)-2-(hydroxyamino)-2-oxoethyl]-3,3-dimethylbutanamideA1CT4
Zinc ionZN
metal

+ 5 additives (Pentaethylene glycol, Carbonate ion, Dimethyl sulfoxide, …)

Pentaethylene glycol1PE
Carbonate ionCO3
Dimethyl sulfoxide

Pfam Families

PF00883Peptidase_M17

Cytosol aminopeptidase family, catalytic domain

ClanCL0865ZnExoPePases

External Links

ECOD PDB View: 9YC0 RCSB PDB: 9YC0 PDBe: 9YC0

Downloads

Download Domain PDB Full PDB Structure

DI(HYDROXYETHYL)ETHERPEG

Sulfate ionSO4

Shown in the structure viewer.