ECODEvolutionary Classification of Protein Domains

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About ECOD

ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

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e1ijdC1 - ECOD Domain | ECOD

ECOD/Domains/e1ijdC1

e1ijdC1

UID: 000061275

PDB

Range: C:1-46
PDB: 1IJD chain C(all domains)
UniProt: P35089 (all domains)

Molecule: LIGHT-HARVESTING PROTEIN B-800/820, ALPHA CHAIN

3D Structure

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Related Domains

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Classification

AArchitectureextended segments(a.20)

XX-groupBacterial light-harvesting complex subunits(5074)

HH-groupBacterial light-harvesting complex subunits(5074.1)

TT-groupBacterial light-harvesting complex subunits(5074.1.1)

FFamilyLHC(5074.1.1.1)

Ligands

in contact, ≤ 4 Å

Bacteriochlorophyll ABCL
drugDrugBank DB01853
Rhodopinal glucosideRPA

+ 1 additive (octyl beta-D-glucopyranoside)

octyl beta-D-glucopyranoside

Pfam Families

Antenna complex alpha/beta subunit

External Links

ECOD PDB View: 1IJD RCSB PDB: 1IJD PDBe: 1IJD UniProt: P35089

Downloads

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within 5 Å only

Shown in the structure viewer. Drug annotations from DrugDomain.