ECODEvolutionary Classification of Protein Domains

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ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

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e4rubB1 - ECOD Domain | ECOD

ECOD/Domains/e4rubB1

e4rubB1

UID: 000065083

PDB

Range: B:11-147
PDB: 4RUB chain B(all domains)
UniProt: P00876 (all domains)
Gene: rbcL

Molecule: RIBULOSE 1,5-BISPHOSPHATE CARBOXYLASE/OXYGENASE (FORM IV)

3D Structure

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Related Domains

Browse other domains in RuBisCO_large_N →

Classification

AArchitecturea+b two layers(a.11)

XX-groupAlpha-beta plaits(304)

HH-groupRuBisCO, large subunit, small (N-terminal) domain(304.10)

TT-groupRuBisCO, large subunit, small (N-terminal) domain(304.10.1)

FFamilyRuBisCO_large_N(304.10.1.1)

Ligands

in contact, ≤ 4 Å

2-CARBOXYARABINITOL-1,5-DIPHOSPHATECAP
Magnesium ionMG
metalwithin 5 Å only

Shown in the structure viewer. Drug annotations from DrugDomain.

Pfam Families

PF02788RuBisCO_large_N

Ribulose bisphosphate carboxylase large chain, N-terminal domain

External Links

ECOD PDB View: 4RUB RCSB PDB: 4RUB PDBe: 4RUB UniProt: P00876

Downloads

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