ECODEvolutionary Classification of Protein Domains

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PDB 4RUB

X-RAY DIFFRACTION2.70 Å8 chains12 ECOD domains

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3D Structure(domains colored, ligands/nucleic acids shown)

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Domains by Chain

Chain ARIBULOSE 1,5-BISPHOSPHATE CARBOXYLASE/OXYGENASE (FORM IV)view chain

2 domains

e4rubA1(A:11-147)e4rubA2(A:151-473)

Chain BRIBULOSE 1,5-BISPHOSPHATE CARBOXYLASE/OXYGENASE (FORM IV)view chain

2 domains

e4rubB1(B:11-147)e4rubB2(B:151-473)

Chain CRIBULOSE 1,5-BISPHOSPHATE CARBOXYLASE/OXYGENASE (FORM IV)view chain

2 domains

e4rubC1(C:11-147)e4rubC2(C:151-473)

Chain DRIBULOSE 1,5-BISPHOSPHATE CARBOXYLASE/OXYGENASE (FORM IV)view chain

2 domains

e4rubD1(D:11-147)e4rubD2(D:151-473)

Chain SRIBULOSE 1,5-BISPHOSPHATE CARBOXYLASE/OXYGENASE (FORM IV)view chain

1 domain

e4rubS1(S:1-123)

Chain TRIBULOSE 1,5-BISPHOSPHATE CARBOXYLASE/OXYGENASE (FORM IV)view chain

1 domain

e4rubT1(T:1-123)

Chain URIBULOSE 1,5-BISPHOSPHATE CARBOXYLASE/OXYGENASE (FORM IV)view chain

1 domain

e4rubU1(U:1-123)

Chain VRIBULOSE 1,5-BISPHOSPHATE CARBOXYLASE/OXYGENASE (FORM IV)view chain

1 domain

e4rubV1(V:1-123)

All Domains (12)

#	Chain	Domain ID	Range	Family	Classification
1	A	e4rubA1	A:11-147	RuBisCO_large_N	304 → 304.10 → 304.10.1
2	A	e4rubA2	A:151-473	RuBisCO_large	2002 → 2002.1 → 2002.1.1
3	B	e4rubB1	B:11-147	RuBisCO_large_N	304 → 304.10 → 304.10.1
4	B	e4rubB2	B:151-473	RuBisCO_large	2002 → 2002.1 → 2002.1.1
5	C	e4rubC1	C:11-147	RuBisCO_large_N	304 → 304.10 → 304.10.1
6	C	e4rubC2	C:151-473	RuBisCO_large	2002 → 2002.1 → 2002.1.1
7	D	e4rubD1	D:11-147	RuBisCO_large_N	304 → 304.10 → 304.10.1
8	D	e4rubD2	D:151-473	RuBisCO_large	2002 → 2002.1 → 2002.1.1
9	S	e4rubS1	S:1-123	RuBisCO_small	302 → 302.2 → 302.2.1
10	T	e4rubT1	T:1-123	RuBisCO_small	302 → 302.2 → 302.2.1
11	U	e4rubU1	U:1-123	RuBisCO_small	302 → 302.2 → 302.2.1
12	V	e4rubV1	V:1-123	RuBisCO_small	302 → 302.2 → 302.2.1

Visualization Legend

ECOD domains (colored by index)Unclassified protein regionsNucleic acids (RNA/DNA)Ligands/cofactors