ECODEvolutionary Classification of Protein Domains

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About ECOD

ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

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e1t0aB1 - ECOD Domain | ECOD

ECOD/Domains/e1t0aB1

e1t0aB1

UID: 000079241

PDB

Range: B:2-159
PDB: 1T0A chain B(all domains)
UniProt: Q8EBR3 (all domains)
Gene: ispF

Molecule: 2C-methyl-D-erythritol 2,4-cyclodiphosphate synthase

3D Structure

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Related Domains

Browse other domains in YgbB →

Classification

AArchitecturea+b three layers(a.12)

XX-groupBacillus chorismate mutase-like(301)

HH-group2C-methyl-D-erythritol 2,4-cyclodiphosphate synthase IspF(301.5)

TT-group2C-methyl-D-erythritol 2,4-cyclodiphosphate synthase IspF(301.5.1)

FFamilyYgbB(301.5.1.1)

Ligands

in contact, ≤ 4 Å

Farnesyl diphosphateFPP
drugDrugBank DB07780
COBALT (II) IONCO
metal
Zinc ionZN

Pfam Families

YgbB family

External Links

ECOD PDB View: 1T0A RCSB PDB: 1T0A PDBe: 1T0A UniProt: Q8EBR3

Downloads

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metal

Shown in the structure viewer. Drug annotations from DrugDomain.