ECODEvolutionary Classification of Protein Domains

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ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

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e2phnB2 - ECOD Domain | ECOD

ECOD/Domains/e2phnB2

e2phnB2

UID: 000079433

PDB

Range: B:2-38,B:123-248
PDB: 2PHN chain B(all domains)
UniProt: O28028 (all domains)
Gene: cofE

Molecule: F420-0:gamma-glutamyl ligase

3D Structure

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Related Domains

Browse other domains in F420_ligase →

Classification

AArchitecturea+b three layers(a.12)

XX-groupCofE-like(4093)

HH-groupCofE-like(4093.1)

TT-groupCofE-like(4093.1.1)

FFamilyF420_ligase(4093.1.1.1)

Ligands

in contact, ≤ 4 Å

Guanosine-5'-DiphosphateGDP
drugDrugBank DB04315
MANGANESE (II) IONMN
metal

+ 2 additives (Acetate, 1,2-ETHANEDIOL)

Pfam Families

PF01996F420_ligase

F420-0:Gamma-glutamyl ligase

External Links

ECOD PDB View: 2PHN RCSB PDB: 2PHN PDBe: 2PHN UniProt: O28028

Downloads

Download Domain PDB Download Domain FASTA Full PDB Structure

AcetateACT

DrugBank DB14511

1,2-ETHANEDIOLEDO

Shown in the structure viewer. Drug annotations from DrugDomain.