ECODEvolutionary Classification of Protein Domains

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ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

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e4jy7A1 - ECOD Domain | ECOD

ECOD/Domains/e4jy7A1

e4jy7A1

UID: 000869690

PDB

Range: A:1-193
PDB: 4JY7 chain A(all domains)
UniProt: D0C9L6 (all domains)
Gene: pth

Molecule: Peptidyl-tRNA hydrolase

3D Structure

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Related Domains

Browse other domains in Pept_tRNA_hydro →

Classification

AArchitecturea/b three-layered sandwiches(a.17)

XX-groupPhosphorylase/hydrolase-like(2011)

HH-groupPeptidyl-tRNA hydrolase-like(2011.2)

TT-groupPeptidyl-tRNA hydrolase-like(2011.2.1)

FFamilyPept_tRNA_hydro(2011.2.1.3)

Ligands

in contact, ≤ 4 Å

Only buffers and crystallization additives.

+ 4 additives (Acetate, Glycerin, 1,2-ETHANEDIOL, …)

AcetateACT
DrugBank DB14511
GlycerinGOL
DrugBank DB09462
1,2-ETHANEDIOL

Pfam Families

PF01195Pept_tRNA_hydro

Peptidyl-tRNA hydrolase

ClanCL0408PUP

External Links

ECOD PDB View: 4JY7 RCSB PDB: 4JY7 PDBe: 4JY7 UniProt: D0C9L6

Downloads

Download Domain PDB Download Domain FASTA Full PDB Structure

DI(HYDROXYETHYL)ETHERPEG

Shown in the structure viewer. Drug annotations from DrugDomain.