ECODEvolutionary Classification of Protein Domains

Home Browse Search Download Help

About ECOD

ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

Quick Links

Browse Classification
Search
Download Data
Documentation
Privacy

Resources

Grishin Lab
UT Southwestern
RCSB PDB
AlphaFold DB
ecod.database@gmail.com

© 2014-2026 Grishin Lab / HHMI / UTSW

e2gj8A1 - ECOD Domain | ECOD

ECOD/Domains/e2gj8A1

e2gj8A1

UID: 000009606

RepresentativePDB

Range: A:216-376
PDB: 2GJ8 chain A(all domains)
UniProt: P25522 (all domains)
Gene: mnmE

Molecule: tRNA modification GTPase trmE

3D Structure

Loading viewer...

Related Domains

Browse other domains in MMR_HSR1 →

Classification

AArchitecturea/b three-layered sandwiches(a.17)

XX-groupP-loop domains-like(2004)

HH-groupP-loop domains-related(2004.1)

TT-groupP-loop containing nucleoside triphosphate hydrolases(2004.1.1)

FFamilyMMR_HSR1(2004.1.1.73)

Ligands

in contact, ≤ 4 Å

Tetrafluoroaluminate IonALF
drugDrugBank DB04444
Guanosine-5'-DiphosphateGDP
drugDrugBank DB04315

Pfam Families

PF01926MMR_HSR1

50S ribosome-binding GTPase

ClanCL0023P-loop_NTPase

External Links

ECOD PDB View: 2GJ8 RCSB PDB: 2GJ8 PDBe: 2GJ8 UniProt: P25522

Downloads

Download Domain PDB Download Domain FASTA Full PDB Structure

Potassium ion

K

metal

Magnesium ionMG

metal

Selenium atomSE

Shown in the structure viewer. Drug annotations from DrugDomain.